flow-cytometry analysis pipeline Search Results


imaris  (Oxford Instruments)
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Oxford Instruments imaris
Imaris, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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labview 8.6  (National Instruments Inc)
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National Instruments Inc labview 8.6
Labview 8.6, supplied by National Instruments Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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cytoflex lx flow cytometer  (Danaher Inc)
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Danaher Inc cytoflex lx flow cytometer
Cytoflex Lx Flow Cytometer, supplied by Danaher Inc, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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flow cytometry data  (Tsang MD Inc)
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Tsang MD Inc flow cytometry data
Flow Cytometry Data, supplied by Tsang MD Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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facsymphony  (Becton Dickinson)
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Becton Dickinson facsymphony
Facsymphony, supplied by Becton Dickinson, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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genomics rhapsody analysis pipeline cwl  (Becton Dickinson)
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Becton Dickinson genomics rhapsody analysis pipeline cwl
Genomics Rhapsody Analysis Pipeline Cwl, supplied by Becton Dickinson, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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precise whole transcriptome assay analysis pipeline v2.0  (Becton Dickinson)
90
Becton Dickinson precise whole transcriptome assay analysis pipeline v2.0
Heterogeneity of EPCAM + PLET1 + cells in the E10.5 and E12.5 thymic primordium. (A) Schematic showing experimental design. Thymic primordia were microdissected from E10.5 and E12.5 wild-type embryos and dissociated to single cell suspensions. Single E10.5 and E12.5 EPCAM + PLET1 + TEC were then deposited into BD Precise WTA Single Cell Encoding plates by flow cytometry processed for single cell <t>transcriptome</t> sequencing using BD Precise WTA reagents. (B, C) tSNE visualizing the clustering results with Seurat colored by cluster (B) and developmental stage (C) (n=709 cells). (D) Heat map showing differentially expressed genes among the eight clusters. (E) Expression of Notch signalling related plus selected other genes across all clusters. (F) Violin plot showing expression of selected markers across all clusters.
Precise Whole Transcriptome Assay Analysis Pipeline V2.0, supplied by Becton Dickinson, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/precise whole transcriptome assay analysis pipeline v2.0/product/Becton Dickinson
Average 90 stars, based on 1 article reviews
precise whole transcriptome assay analysis pipeline v2.0 - by Bioz Stars, 2026-05
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partek flow  (Partek)
86
Partek partek flow
Heterogeneity of EPCAM + PLET1 + cells in the E10.5 and E12.5 thymic primordium. (A) Schematic showing experimental design. Thymic primordia were microdissected from E10.5 and E12.5 wild-type embryos and dissociated to single cell suspensions. Single E10.5 and E12.5 EPCAM + PLET1 + TEC were then deposited into BD Precise WTA Single Cell Encoding plates by flow cytometry processed for single cell <t>transcriptome</t> sequencing using BD Precise WTA reagents. (B, C) tSNE visualizing the clustering results with Seurat colored by cluster (B) and developmental stage (C) (n=709 cells). (D) Heat map showing differentially expressed genes among the eight clusters. (E) Expression of Notch signalling related plus selected other genes across all clusters. (F) Violin plot showing expression of selected markers across all clusters.
Partek Flow, supplied by Partek, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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7aad  (Becton Dickinson)
90
Becton Dickinson 7aad
Heterogeneity of EPCAM + PLET1 + cells in the E10.5 and E12.5 thymic primordium. (A) Schematic showing experimental design. Thymic primordia were microdissected from E10.5 and E12.5 wild-type embryos and dissociated to single cell suspensions. Single E10.5 and E12.5 EPCAM + PLET1 + TEC were then deposited into BD Precise WTA Single Cell Encoding plates by flow cytometry processed for single cell <t>transcriptome</t> sequencing using BD Precise WTA reagents. (B, C) tSNE visualizing the clustering results with Seurat colored by cluster (B) and developmental stage (C) (n=709 cells). (D) Heat map showing differentially expressed genes among the eight clusters. (E) Expression of Notch signalling related plus selected other genes across all clusters. (F) Violin plot showing expression of selected markers across all clusters.
7aad, supplied by Becton Dickinson, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/7aad/product/Becton Dickinson
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partek flow 11 0 24 0414  (Partek)
86
Partek partek flow 11 0 24 0414
Heterogeneity of EPCAM + PLET1 + cells in the E10.5 and E12.5 thymic primordium. (A) Schematic showing experimental design. Thymic primordia were microdissected from E10.5 and E12.5 wild-type embryos and dissociated to single cell suspensions. Single E10.5 and E12.5 EPCAM + PLET1 + TEC were then deposited into BD Precise WTA Single Cell Encoding plates by flow cytometry processed for single cell <t>transcriptome</t> sequencing using BD Precise WTA reagents. (B, C) tSNE visualizing the clustering results with Seurat colored by cluster (B) and developmental stage (C) (n=709 cells). (D) Heat map showing differentially expressed genes among the eight clusters. (E) Expression of Notch signalling related plus selected other genes across all clusters. (F) Violin plot showing expression of selected markers across all clusters.
Partek Flow 11 0 24 0414, supplied by Partek, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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facsdiva software v8.0.1  (Becton Dickinson)
90
Becton Dickinson facsdiva software v8.0.1
Heterogeneity of EPCAM + PLET1 + cells in the E10.5 and E12.5 thymic primordium. (A) Schematic showing experimental design. Thymic primordia were microdissected from E10.5 and E12.5 wild-type embryos and dissociated to single cell suspensions. Single E10.5 and E12.5 EPCAM + PLET1 + TEC were then deposited into BD Precise WTA Single Cell Encoding plates by flow cytometry processed for single cell <t>transcriptome</t> sequencing using BD Precise WTA reagents. (B, C) tSNE visualizing the clustering results with Seurat colored by cluster (B) and developmental stage (C) (n=709 cells). (D) Heat map showing differentially expressed genes among the eight clusters. (E) Expression of Notch signalling related plus selected other genes across all clusters. (F) Violin plot showing expression of selected markers across all clusters.
Facsdiva Software V8.0.1, supplied by Becton Dickinson, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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bd facsaria sorp  (Becton Dickinson)
90
Becton Dickinson bd facsaria sorp
Heterogeneity of EPCAM + PLET1 + cells in the E10.5 and E12.5 thymic primordium. (A) Schematic showing experimental design. Thymic primordia were microdissected from E10.5 and E12.5 wild-type embryos and dissociated to single cell suspensions. Single E10.5 and E12.5 EPCAM + PLET1 + TEC were then deposited into BD Precise WTA Single Cell Encoding plates by flow cytometry processed for single cell <t>transcriptome</t> sequencing using BD Precise WTA reagents. (B, C) tSNE visualizing the clustering results with Seurat colored by cluster (B) and developmental stage (C) (n=709 cells). (D) Heat map showing differentially expressed genes among the eight clusters. (E) Expression of Notch signalling related plus selected other genes across all clusters. (F) Violin plot showing expression of selected markers across all clusters.
Bd Facsaria Sorp, supplied by Becton Dickinson, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Heterogeneity of EPCAM + PLET1 + cells in the E10.5 and E12.5 thymic primordium. (A) Schematic showing experimental design. Thymic primordia were microdissected from E10.5 and E12.5 wild-type embryos and dissociated to single cell suspensions. Single E10.5 and E12.5 EPCAM + PLET1 + TEC were then deposited into BD Precise WTA Single Cell Encoding plates by flow cytometry processed for single cell transcriptome sequencing using BD Precise WTA reagents. (B, C) tSNE visualizing the clustering results with Seurat colored by cluster (B) and developmental stage (C) (n=709 cells). (D) Heat map showing differentially expressed genes among the eight clusters. (E) Expression of Notch signalling related plus selected other genes across all clusters. (F) Violin plot showing expression of selected markers across all clusters.

Journal: Frontiers in Immunology

Article Title: Thymic epithelial cell fate and potency in early organogenesis assessed by single cell transcriptional and functional analysis

doi: 10.3389/fimmu.2023.1202163

Figure Lengend Snippet: Heterogeneity of EPCAM + PLET1 + cells in the E10.5 and E12.5 thymic primordium. (A) Schematic showing experimental design. Thymic primordia were microdissected from E10.5 and E12.5 wild-type embryos and dissociated to single cell suspensions. Single E10.5 and E12.5 EPCAM + PLET1 + TEC were then deposited into BD Precise WTA Single Cell Encoding plates by flow cytometry processed for single cell transcriptome sequencing using BD Precise WTA reagents. (B, C) tSNE visualizing the clustering results with Seurat colored by cluster (B) and developmental stage (C) (n=709 cells). (D) Heat map showing differentially expressed genes among the eight clusters. (E) Expression of Notch signalling related plus selected other genes across all clusters. (F) Violin plot showing expression of selected markers across all clusters.

Article Snippet: Pre-processing of the FASTQ files was performed using the BD: Precise Whole Transcriptome Assay Analysis Pipeline v2.0.

Techniques: Flow Cytometry, Sequencing, Expressing